I might be a little late, but there is amazing story being written right now...probably the best hurt!spock story i've read. It's about Spock getting framed for murder and getting sentenced to life in a penal colony. the writer tells it from both POV's and damn...it hurts my chest when I read it. This story has got a fuck ton of angst, there is a raped!spock, and very very protective Kirk. It's in the reboot verse, which is awesome...but, it is a WIP; however, she updates pretty regularly, and it's already 150k so...theres a bit there already.

here is the ao3 link

http://archiveofourown.org/works/1442989 (http://archiveofourown.org/works/1442989)

http://archiveofourown.org/works/1442989

I'm not sure if those work, but it's called Closing Walls and Ticking Clocks by missBAMF