I suspect I might have directed you towards the writings of Aconitum Napellus (https://archiveofourown.org/users/AconitumNapellus/pseuds/AconitumNapellus/works?fandom_id=1464) previously, if you've asked before. If it's been a couple of years though, she's probably posted these since:
A Sky of Stars (http://archiveofourown.org/works/2119158/chapters/4623711)
Endurance (http://archiveofourown.org/works/2468843/chapters/5474675)
And I Am Also Quite Blind (http://archiveofourown.org/works/895150/chapters/1728572)

If she's new to you, then:

Postmortem (http://archiveofourown.org/works/1736063/chapters/3704840)
Found (http://archiveofourown.org/works/1732139/chapters/3694106)
Eclipse (http://archiveofourown.org/works/901687/chapters/1743492)
Taken (http://archiveofourown.org/works/3379019/chapters/7391327)

Also Darkartian Penance (http://fannation.shades-of-moonlight.com/archive/viewstory.php?sid=1626&ageconsent=ok&warning=9) by the same author, different pseudonym & only available on this site.

Take Refuge In What You Know (http://archiveofourown.org/works/715652/chapters/1324993) by Corpus Invictus - not new, but a classic hurt!Spock

Marauder (http://archiveofourown.org/works/4777805/chapters/10929362) by KaraStorm - newly finished
Colony War (http://archiveofourown.org/works/4079998/chapters/9188761) (not to the same extent) also by KaraStorm, just finished

Comfort Food (http://ksarchive.com/viewstory.php?sid=3551&warning=2)
Intimate Knowledge (http://ksarchive.com/viewstory.php?sid=3597&warning=1)
Hear No Evil (http://ksarchive.com/viewstory.php?sid=4134)
Jealous Bone (http://ksarchive.com/viewstory.php?sid=6040)
Sometimes The Demons Win (http://ksarchive.com/viewstory.php?sid=6304) - all by TDazz - Mostly not new, but I don't think I've recced them before

Strength (http://ksarchive.com/viewstory.php?sid=4828) by cyberrat - Also not new

Also definitely re-rec How We Operate and Don't Stop Believing from above.

Don't think that's a bad effort for 2 o'clock in the morning!