Have you read seperis' Reboot Series? It features bottom!kirk and protective Spock and Bones, especially in the first story, where they conspire to fix a medical issue Kirk is having. It's one of my all-time favorite series.
Oh, and: it's on AO3 at http://archiveofourown.org/series/2522
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timeasmymeasure
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Date: 2014-09-19 03:07 pm (UTC)Oh, and: it's on AO3 at http://archiveofourown.org/series/2522